This is the genome browser 'TASUKE with GWAS'.
Kumagai M., Kim J., Itoh R. and Itoh T. (2013) TASUKE: a web-based visualization program for large-scale resequencing data. Bioinformatics. 29 (14): 1806-1808.
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This browser shows genome wide variant and coverage depth of re-sequencing data as well as annotation information such as genes, repeats, markers and the rest. Number of variants and depth of coverage are shown in blocks with color gradiation and size varying in size from 1bp to 100 kb. The browser also shows the input data in a GWAS plot.