TASUKE+ Macro Viewer | * Select accessions: Drag on the graph to select rows (accessions). Hold Shift/Ctrl to add to the selection, or Alt to remove rows from the selection. * Select genomic region (Variant count mode): Drag the genome scale bar, or hold “1” and drag on the heatmap to also select accession. * Open in TASUKE+: Click “Open TASUKE+” to open the selected accessions and genomic region in a new tab.

CHR:
Zoom: RowHeight:

Selected: 0 / 0 Label: Zoom:
| Selection Synchronize selections
Selected: 0 / 0 Label: Zoom:
| By opening the extended graph, you can AND/OR/ XOR/Subtract selected accessions between two graphs.

Action:
* Check the box to select the corresponding accession on the graph

| All: Filtering: Checked:

You will lose just all of your settings. (Data won't be deleted.)
* It will be reloaded when restore.

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To learn more about using TASUKE, visit this page.

The TASUKE+ Macro Viewer provides an overview of the TASUKE dataset by multiple genomic analysis.

- You can select samples (accessions) and/or a genomic region from graph by mouse dragging or from the Accession list with filtering for metadata. Click “Open TASUKE+” to open a new tab with the selected accessions and genomic c region.
- Selections are shared across all display modes, allowing you to compare genomic features across different analyses.

Display modes The viewer provides four display modes, selectable from "Mode" in the top menu. Common operations Drag to select accessions Shift/Ctrl + drag to add to the selection Alt + drag to exclude from the selection Hover over a graph and wait to display details (raw values, etc.)
| Variant count / Variant count (Impact = High) Displays variant density across the genome as a heatmap with windows (fixed size e.g., 100kb). Variant count (Impact = High) mode shows high-impact variants predicted by SnpEff. Drag the genome scale bar to select a genomic region. *If the selected region is large (>5 Mb), opening TASUKE may take a long time. Hold “"1" and drag on the heatmap to select both accessions and genomic region
| ADMIXTURE Displays the ancestry fraction (Q matrices) of ADMIXTURE results as bar plots. Results for multiple K (number of population assumed) can be shown in parallel.
| PCA Displays a two-dimensional scatter plot from principal component analysis (PCA). Choose any principal components for the X and Y axes Drag to select points (accessions) Ctrl + mouse wheel: zoom. Space + drag: pan Opening the extended graph allows you to combine selections between two graphs using: AND/OR/XOR/Subtract. Enable "Synchronize selections" to reflect the accession selection in both grapaphs.
Notes "Selection > Accession list" from the top menu opens a dialog similar to AccessionManager on the TASUKE main page. Checking a row selects the corresponding accession in the graph. If the Macro viewer is opened from the TASUKE main page ("Tools > Macro-genome Viewer"), the following settings are inherited:1)Show/Hide Accessions and 2)Display Options. To change them, modify the settings on the TASUKE main page and reopen the Macro-genome Viewer. Click Reset in the top menu to clear inherited settings. Export options are available from the "Export". "Crrent graph (PNG)" exports an image reflecting current view (zoom, labels, etc.) Raw data for Variant count, ADMIXTURE, and PCA are downloadable with the current order and grouping of accessions in the graph.